PUBLICATION

 

JOURNAL PUBLICATIONS 

     Google Scholar Citations to the following publications

 

32) Kim E-Y, Ashlock D, and Yoon SHIdentification of critical connectors in the directed reaction-centric graphs of microbial metabolic networksBMC Bioinformatics 20:328 (2019.06)

31) Kim S, Kim Y, and Yoon SHOverexpression of YbeD in Escherichia coli enhances thermotoleranceJ. Microbiol. Biotechnol. 28; 29(3): 401~409 (2019.03)

30) Kim H, Kim S, and Yoon SHMetabolic network reconstruction and phenome analysis of the industrial microbe, Escherichia coli BL21(DE3)” PLoS ONE 13(9): e0204375 (2018.09)

29) Nguyen AD, Hwang IY, Lee OK, Hur DH, Jeon YC, Hadiyati S, Kim M-S, Yoon SH, Jeong H, and Lee EY “Functional analysis of Methylomonas sp. DH-1 genome as a promising biocatalyst for bioconversion of methane to valuable chemicalsCatalysts 8(3), 117 (2018.03) 

28) Kim SK, Lee D-H, Kim OC, Kim JF, and Yoon SHTunable control of an Escherichia coli expression system for the overproduction of membrane proteins by titrated expression of a mutant lac repressorACS Synthetic Biology 6(9): 1766-1773 (2017.09) 

27) Jeong H, Lee S-W, Kim SH, Kim E-Y, Kim S, and Yoon SHGlobal functional analysis of butanol-sensitive Escherichia coli and its evolved butanol-tolerant strainJ. Microbiol. Biotechnol. 27(6):1171–1179 (2017.06) 

26) Kim S, Jeong H, Kim E-Y, Kim JF, Lee SY, and Yoon SHGenomic and transcriptomic landscape of Escherichia coli BL21(DE3)Nucleic Acids Res. 45(9): 5285-5293 (2017.05)  

25) Yoon SH (corresponding), Park YK, and Kim JF “PAIDB v2.0: exploration and analysis of pathogenicity and resistance islandsNucleic Acids Res. 43:D624-D630 (2015.01) 

24) Yoon SH, Turkarslan S, Reiss DJ, Pan M, Burn JA, Costa KC, Lie TJ, Slagel J, Moritz RL, Hackett M, Leigh JA, and Baliga NS “A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogenGenome Research 23(11):1839-1851 (2013.11) Hanbitsa 

23) Dai J, Yoon SH (co-first), Sim HY, Yang YS, Oh TK, Kim JF, and Hong JW “Charting microbial phenotypes in multiplex nanoliter batch bioreactorsAnal. Chem. 85(12):5892-5899 (2013.06) 

22) Costa KC, Yoon SH, Pan M, Burn JA, Baliga NS, and Leigh JA “Effects of H2 and formate on growth yield and regulation of methanogenesis in Methanococcus maripaludisJ. Bacteriol. 195(7):1456-1462 (2013.04) 

21) Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, and Kim JF “Comparative multi-omics systems analysis of Escherichia coli strains B and K-12Genome Biology 13(5):R37 (2012.05) Hanbitsa 

20) Yoon SH, Reiss DJ, Bare JC, Tenenbaum D, Pan M, Slagel J, Moritz RL, Lim S, Hackett M, Menon AL, Adams MW, Barnebey A, Yannone SM, Leigh JA, and Baliga NS “Parallel evolution of transcriptome architecture during genome reorganizationGenome Research 21(11):1892-1904 (2011.11) Hanbitsa 

19) Yoon SH, Kim SK, and Kim JF “Secretory production of recombinant proteins in Escherichia coliRecent Patents on Biotechnology 4(1):23-29 (2010.01)

18) Jeong H, Barbe V, Lee CH, Vallenet D, Yu D-S, Choi S-H, Couloux A, Lee S-W, Yoon SH, Cattolico L, Hur C-G, Park H-S, Ségurens B, Kim SC, Oh TK, Lenski RE, Studier FW, Daegelen P, and Kim JF “Genome sequences of Escherichia coli B strains REL606 and BL21(DE3)J. Mol. Biol. 394(4):644-652 (2009.12) (Featured as a Cover) 

17) Barrick JE, Yu D-S, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, and Kim JF “Genome evolution and adaptation in a long-term experiment with Escherichia coliNature 461(7268):1243-1247 (2009.10), Highly cited paper in Hanbitsa 

16) Kim JF, Jeong H, Yu DS, Choi S-H, Hur C-G, Park M-S, Yoon SH, Kim D-W, Ji GE, Park H-S, and Oh TK “Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011J. Bacteriol. 191(2):678-679 (2009.01) 

15) Jeong H, Yoon SH, Yu D-S, Oh TK, and Kim JF “Recent progress of microbial genome projects in KoreaBiotechnol. J. 3(5):601-611 (2008.05) 

14) Nam D, Yoon SH, and Kim JF “Ensemble learning of genetic networks from time-series expression dataBioinformatics 23(23):3225-3231 (2007.12) 

13) Yoon SH, Park YK, Lee S, Choi D, Oh TK, Hur C-G, and Kim JF “Towards pathogenomics: a web-based resource for pathogenicity islandsNucleic Acids Res. 35:D395-D400 (2007.01) 

12) Jiang H, Shang L, Yoon SH, Lee SY, and Yu Z “Optimal production of poly-γ-glutamic acid by metabolically engineered Escherichia coliBiotechnol. Lett. 28(16):1241-1246 (2006.08) 

11) Hur C-G, Kim S, Kim CH, Yoon SH, In YH, Kim C, and Cho HG “FASIM: Fragments assembly simulation using biased-sampling model and assembly simulation for microbial genome shotgun sequencingJ. Microbiol. Biotechnol. 16(5):683-688 (2006.05) 

10) Jeong H, Yoon SH, Lee HK, Oh TK, and Kim JF “Lessons from the sea: genome sequence of an algicidal marine bacterium Hahella chejuensis (적조 살상 해양 미생물 Hahella chejuensis의 유전체 구조)Kor. J. Microbiol. Biotechnol. 34(1):1-6 (2006.03)

9) Jeong H, Yim JH, Lee C, Choi SH, Park YK, Yoon SH, Hur CG, Kang HY, Kim D, Lee HH, Park KH, Park SH, Park HS, Lee HK, Oh TK, and Kim JF “Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agentNucleic Acids Res. 33(22):7066-7073 (2005.12) 

8) Yoon SH, Hur C-G, Kang HY, Kim YH, Oh TK, and Kim JF “A computational approach for identifying pathogenicity islands in prokaryotic genomesBMC Bioinformatics 6:184 (2005.07) 

7) Yoon SH, Han MJ, Lee SY, Jeong KJ, and Yoo JS “Combined transcriptome and proteome analysis of Escherichia coli during the high cell density cultureBiotechnol. Bioeng. 81(7):753-767 (2003.03) 

6) Yoon SH and Lee SY "Comparison of transcript levels by DNA microarray and metabolic flux based on flux analysis for the production of poly-γ-glutamic acid in recombinant Escherichia coli" Genome Informatics 13:587-588 (2002.12)

5) Kim JS, Yoon SH, and Lee SY “Development of database systems by integrating heterogeneous metabolic databasesGenome Informatics 13:486-487 (2002.12)

4) Heo WJ, Yoon SH, and Lee SY "Global gene expression profiling of E. coli and its mutant unable to produce acetate" Genome Informatics 13:270-271 (2002.12)

3) Yoon SH, Do JH, Lee SY, and Chang HN “Production of poly-γ-glutamic acid by fed-batch culture of Bacillus licheniformisBiotechnol. Lett. 22(7):585-588 (2000.04) 

2) Chung BH, Choi YJ, Yoon SH, Lee SY, and Lee YI “Process development for production of recombinant human insulin-like growth factor-I in Escherichia coliJ. Ind. Microbiol. Biotechnol. 24(2):94-99 (2000.02) 

1) Yoon SH, Choi J, and Lee SY “Development of DNA chip microarrayerJ. Microbiol. Biotechnol. 10(1):21-26 (2000.02) 

 

BOOK CHAPTERS

1) Yoon SH, Jeong H, Kwon S-K, and Kim JF “Chapter 1. Genomics, biological features, and biotechnological applications of Escherichia coli B: “Is B for better?!””, pp. 1-17, In: Systems Biology and Biotechnology of E. coli, Lee SY (ed.) Springer, Berlin, Germany (2009. 4)

 

PATENTS

8) Yoon SH and Kim S “High-temperature resistant microorganism overexpressing YbeD protein and method for culturing of high-temperature resistant microorganism using the same” Korean Patent: appl. 10-2018-0009345 (2018.01.25)

윤성호, 김신연 “YbeD 단백질을 과발현하는 고온 내성 미생물 및 이를 이용한 고온 내성 미생물의 배양 방법” 특허출원번호: 10-2018-0009345 (2018.01.25)

7) 김지현, 윤성호, 김성근, 이대희, 권순경, 오태광, 김오철, 정해영 “LacI 단백질 변이체를 이용한 독성 단백질의 생산 방법” (우선권내역: 10-2012-0038237 / 10-2013-0002227) PCT/KR2013/002919 (2013.04.08)

6) Yoon SH, Lee DH, Kim SK, and Kim OC “Method for producing toxic protein using the LacI protein mutant” Korean Patent number 10-1419214-00-00 (2014.07.08)

    윤성호, 이대희, 김성근, 김오철 “LacI 단백질 변이체를 이용한 독성 단백질의 생산방법” 특허등록번호 10-1419214-00-00 (2014.07.08)

5) Kim JF, Kim SK, Kwon S-K, Oh TK, Yoon SH, Lee DH, and Jeong H “LacI protein mutant and uses thereof” Korean Patent: appl. 10-2012-0038237 (2012.04.13)

    김지현, 김성근, 권순경, 오태광, 윤성호, 이대희, 정해영 “LacI 단백질 변이체 및 이의 용도” 특허출원번호 10-2012-0038237 (2012.04.13)

4) Hong JW, Kim JF, Oh TK, and Yoon SH “Microfluidic array system for biological, chemical, and biochemical assessments” US7906074B2 (Date of Patent: March 15, 2011)

3) Jeong H, Han JH, Yoon SH, Ryu C-M, Kim JF, Oh TK, Jung MH, and Yoon SP “Method for Selecting Alcohol Resistant Variants of Microorganism Using Mutagenesis by Proton Beam Irradiation” Korean Patent: appl. 10-2009-0080393 (2009.08.28)

    정해영, 한지희, 윤성호, 류충민, 김지현, 오태광, 정명환, 윤상필 “양성자 빔 조사에 의한 돌연변이 유도방법을 이용한 알코올 내성 미생물 변이체의 선별 방법” 특허출원번호 10-2009-0080393 (2009.08.28)

2) Hong JW, Kim JF, Oh TK, and Yoon SH “A fluidic array system for biological, chemical, and biochemical assessments” WO2008124781A1 / US20080248960A1 (PCT/US08/59777) (filed on April 9, 2008)

1) Lee SY and Yoon SH "Methods for producing high concentration of poly (gamma-glutamic acid) by fed-batch culture of Bacillus licheniformis" Korean Patent: appl. 97-67605 (1997.12.10), registered 250627 (2000.01.05)

    이상엽, 윤성호 "바실러스 리케니포니스에 의한 폴리글루탐산(g-PGA)의 고효율 생산방법" 특허출원번호 10-1997-0067605 (1997.12.10), 등록번호 1002506270000 (2000.01.05)

 

PROGRAM REGISTRATIONS

2) 김지현, 윤성호, 허철구, 오태광. “미생물 유전체 내에서 외래에서 유입된 병원성 유전자군인 pathogenicity island를 예측하는 방법” (등록일자: 2007.07.30; 등록번호: S-2007-003962)

1) 김지현, 윤성호, 허철구, 박영규, 오태광. “미생물 유전체 내에서 외래에서 유입된 병원성 유전자군인 pathogenicity island를 분석, 예측하는 시스템” (등록일자: 2007.07.30; 등록번호: S-2007-003964)

 

ESSAYS

12) 윤성호미생물의 대사 네트워크 및 유전자조절 네트워크 모델링 기법 개발” BT News, 한국생물공학회, 24(2) (2017.10.09)

11) 윤성호대사경로 재설계를 통한 유용 화학물질 생산 전략” 지능형 바이오시스템 설계 및 합성 연구단 뉴스레터 2(3) (2014.10.23)

10) 윤성호Bio-CAD를 이용한 지능형 바이오시스템 설계” 지능형 바이오시스템 설계 및 합성 연구단 뉴스레터 1(1) (2013.01.18)

9) 윤성호, 이정민 “합성생물학 윤리 및 기술에 관한 미대통령 정책자문 보고서” (NEW DIRECTIONS: The Ethics of Synthetic Biology and Emerging Technologies 번역요약본) KOSEN21 (한민족과학기술자 네트워크, http://www.kosen21.org) (2011. 10. 17)

8) 윤성호합성생물학에서의 미생물 유전자회로 및 대사회로개발” 생명공학정책연구센터 바이오인(BioIn), 16 (2010)

7) 윤성호Institute for Systems Biology” e-Bioindustry News (e-생물산업, 한국미생물/생명공학회 소식지), 22(4) (2009)

6) 윤성호Systems and Synthetic BiologyIn State of the Art Report on Microbial Genomics (미생물유전체 연구동향 분석연구), Ministry of Science and Technology, Korea (2007)

5) 윤성호Biolog사의 Phenotype Microarray (PM) Technology” 미생물과 산업, 32(2): 28-29, 한국미생물학회 (2006)

4) 이승구, 김지현, 정흥채, 송재준, 류충민, 윤성호 “바이오기반 경제구축을 위한 합성생물학 핵심기술 개발” (Development of Platform Technologies for Synthetic Biology), KRIBB, Korea (2006)

3) 김지현, 정해영, 윤성호, 박승환 “시스템 미생물학 : 유전체 해독에서 네트워크 재설계까지” (Systems Microbiology : From Genome Sequencing to Network Engineering), e-Bioindustry News (e-생물산업, 한국미생물/생명공학회 소식지), 16(3) (2003)

2) 김진식, 윤성호, 이상엽 “미생물 게놈 연구”, BioZine (http://biozine.kribb.re.kr) (2001.6)

1) 이상엽, 윤성호, 임근배, 조윤경 “Genomics와 DNA chip” News & Information for Chemical Engineers (NICE), 18(3): 307-311 (2000)